UniProt.ws

DOI: 10.18129/B9.bioc.UniProt.ws  

This is the development version of UniProt.ws; for the stable release version, see UniProt.ws.

R Interface to UniProt Web Services

Bioconductor version: Development (3.18)

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")

 

HTML	R Script	UniProt.ws: A package for retrieving data from the UniProt web service
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, BioCarta, GO, Infrastructure, KEGG, Software
Version	2.41.0
In Bioconductor since	BioC 2.12 (R-3.0) (10 years)
License	Artistic-2.0
Depends	BiocGenerics, methods, RSQLite, utils
Imports	AnnotationDbi, BiocFileCache, BiocBaseUtils, httr, httpcache, jsonlite, progress, rjsoncons
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, RUnit
SystemRequirements
Enhances
URL	https://github.com/Bioconductor/UniProt.ws
BugReports	https://github.com/Bioconductor/UniProt.ws/issues
Depends On Me
Imports Me	dagLogo, drugTargetInteractions
Suggests Me	cleaver, qPLEXanalyzer
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	UniProt.ws_2.41.0.tar.gz
Windows Binary	UniProt.ws_2.41.0.zip (64-bit only)
macOS Binary (x86_64)	UniProt.ws_2.41.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/UniProt.ws
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/UniProt.ws
Bioc Package Browser	https://code.bioconductor.org/browse/UniProt.ws/
Package Short Url	https://bioconductor.org/packages/UniProt.ws/
Package Downloads Report	Download Stats