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UniProt.ws

This is the development version of UniProt.ws; for the stable release version, see UniProt.ws.

R Interface to UniProt Web Services


Bioconductor version: Development (3.19)

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("UniProt.ws")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")
UniProt.ws: A package for retrieving data from the UniProt web service HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, BioCarta, GO, Infrastructure, KEGG, Software
Version 2.43.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License Artistic-2.0
Depends BiocGenerics, methods, RSQLite, utils
Imports AnnotationDbi, BiocFileCache, BiocBaseUtils, httr, httpcache, jsonlite, progress, rjsoncons
System Requirements
URL https://github.com/Bioconductor/UniProt.ws
Bug Reports https://github.com/Bioconductor/UniProt.ws/issues
See More
Suggests BiocStyle, knitr, rmarkdown, RUnit
Linking To
Enhances
Depends On Me
Imports Me dagLogo, drugTargetInteractions
Suggests Me cleaver, qPLEXanalyzer
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package UniProt.ws_2.43.0.tar.gz
Windows Binary UniProt.ws_2.43.0.zip
macOS Binary (x86_64) UniProt.ws_2.43.0.tgz
macOS Binary (arm64) UniProt.ws_2.43.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/UniProt.ws
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/UniProt.ws
Bioc Package Browser https://code.bioconductor.org/browse/UniProt.ws/
Package Short Url https://bioconductor.org/packages/UniProt.ws/
Package Downloads Report Download Stats