TPP

This is the development version of TPP; for the stable release version, see TPP.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Analyze thermal proteome profiling (TPP) experiments

Bioconductor version: Development (3.24)

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

Author: Dorothee Childs [cre, aut], Nils Kurzawa [aut], Holger Franken [aut], Carola Doce [aut], Mikhail Savitski [aut], Wolfgang Huber [aut]

Maintainer: Dorothee Childs <d.childs at posteo.de>

Citation (from within R, enter citation("TPP")):

Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski, Wolfgang Huber. TPP: Analyze thermal proteome profiling (TPP) experiments. doi:10.18129/B9.bioc.TPP, R package version 3.41.4, https://bioconductor.org/packages/TPP.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TPP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP")

TPP_introduction_NPARC	PDF	R Script
TPP_introduction_1D	PDF	R Script
TPP_introduction_2D	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ImmunoOncology, MassSpectrometry, Proteomics, Software
Version	3.41.4
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	Artistic-2.0
Depends	R (>= 3.4), Biobase, dplyr, magrittr, tidyr
Imports	data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rlang, rmarkdown, splines, stats, stringr, tibble, utils, VennDiagram, VGAM
System Requirements
URL

Suggests	BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	Rtpca
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TPP_3.41.4.tar.gz
Windows Binary (x86_64)	TPP_3.41.4.zip
macOS Binary (big-sur-x86_64)	TPP_3.41.4.tgz
macOS Binary (sonoma-arm64)	TPP_3.41.4.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TPP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TPP
Package Short Url	https://bioconductor.org/packages/TPP/
Package Downloads Report	Download Stats