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SeqSQC

This is the development version of SeqSQC; for the stable release version, see SeqSQC.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

A bioconductor package for sample quality check with next generation sequencing data

DOI: 10.18129/B9.bioc.SeqSQC

Bioconductor version: Development (3.24)

The SeqSQC is designed to identify problematic samples in NGS data, including samples with gender mismatch, contamination, cryptic relatedness, and population outlier.

Author: Qian Liu [aut, cre]

Maintainer: Qian Liu <qliu7 at buffalo.edu>

Citation (from within R, enter citation("SeqSQC")):

Qian Liu. SeqSQC: A bioconductor package for sample quality check with next generation sequencing data. doi:10.18129/B9.bioc.SeqSQC, R package version 1.35.0, https://bioconductor.org/packages/SeqSQC.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("SeqSQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqSQC")

Details

Package Archives

Follow Installation instructions to use this package in your R session.