Welcome to the new bioconductor.org!


This is the development version of SCnorm; for the stable release version, see SCnorm.

Normalization of single cell RNA-seq data

Bioconductor version: Development (3.19)

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Author: Rhonda Bacher

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("SCnorm")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

SCnorm Vignette PDF R Script
Reference Manual PDF


biocViews ImmunoOncology, Normalization, RNASeq, SingleCell, Software
Version 1.25.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL (>= 2)
Depends R (>= 3.4.0)
Imports SingleCellExperiment, SummarizedExperiment, stats, methods, graphics, grDevices, parallel, quantreg, cluster, moments, data.table, BiocParallel, S4Vectors, ggplot2, forcats, BiocGenerics
System Requirements
URL https://github.com/rhondabacher/SCnorm
Bug Reports https://github.com/rhondabacher/SCnorm/issues
See More
Suggests BiocStyle, knitr, rmarkdown, devtools
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SCnorm_1.25.0.tar.gz
Windows Binary SCnorm_1.25.0.zip
macOS Binary (x86_64) SCnorm_1.25.0.tgz
macOS Binary (arm64) SCnorm_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SCnorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SCnorm
Bioc Package Browser https://code.bioconductor.org/browse/SCnorm/
Package Short Url https://bioconductor.org/packages/SCnorm/
Package Downloads Report Download Stats