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SCnorm

This is the development version of SCnorm; for the stable release version, see SCnorm.

Normalization of single cell RNA-seq data


Bioconductor version: Development (3.20)

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Author: Rhonda Bacher

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("SCnorm")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SCnorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCnorm")
SCnorm Vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, Normalization, RNASeq, SingleCell, Software
Version 1.27.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL (>= 2)
Depends R (>= 3.4.0)
Imports SingleCellExperiment, SummarizedExperiment, stats, methods, graphics, grDevices, parallel, quantreg, cluster, moments, data.table, BiocParallel, S4Vectors, ggplot2, forcats, BiocGenerics
System Requirements
URL https://github.com/rhondabacher/SCnorm
Bug Reports https://github.com/rhondabacher/SCnorm/issues
See More
Suggests BiocStyle, knitr, rmarkdown, devtools
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SCnorm_1.27.0.tar.gz
Windows Binary SCnorm_1.27.0.zip (64-bit only)
macOS Binary (x86_64) SCnorm_1.27.0.tgz
macOS Binary (arm64) SCnorm_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SCnorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SCnorm
Bioc Package Browser https://code.bioconductor.org/browse/SCnorm/
Package Short Url https://bioconductor.org/packages/SCnorm/
Package Downloads Report Download Stats