Rbowtie
This is the development version of Rbowtie; for the stable release version, see Rbowtie.
R bowtie wrapper
Bioconductor version: Development (3.20)
This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.
Author: Florian Hahne [aut], Anita Lerch [aut], Michael Stadler [aut, cre]
Maintainer: Michael Stadler <michael.stadler at fmi.ch>
citation("Rbowtie")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Rbowtie")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rbowtie")
An introduction to Rbowtie | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Alignment, Sequencing, Software |
Version | 1.45.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
License | Artistic-2.0 | file LICENSE |
Depends | |
Imports | utils |
System Requirements | GNU make |
URL | https://github.com/fmicompbio/Rbowtie |
Bug Reports | https://github.com/fmicompbio/Rbowtie/issues |
See More
Suggests | testthat, parallel, BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | QuasR |
Imports Me | crisprBowtie, multicrispr, seqpac |
Suggests Me | crisprDesign, eisaR |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Rbowtie_1.45.0.tar.gz |
Windows Binary (x86_64) | Rbowtie_1.45.0.zip |
macOS Binary (x86_64) | Rbowtie_1.45.0.tgz |
macOS Binary (arm64) | Rbowtie_1.45.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rbowtie |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rbowtie |
Bioc Package Browser | https://code.bioconductor.org/browse/Rbowtie/ |
Package Short Url | https://bioconductor.org/packages/Rbowtie/ |
Package Downloads Report | Download Stats |