PepsNMR

This is the development version of PepsNMR; for the stable release version, see PepsNMR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Pre-process 1H-NMR FID signals

Bioconductor version: Development (3.24)

This package provides R functions for common pre-procssing steps that are applied on 1H-NMR data. It also provides a function to read the FID signals directly in the Bruker format.

Author: Manon Martin [aut, cre], Bernadette Govaerts [aut, ths], Benoît Legat [aut], Paul H.C. Eilers [aut], Pascal de Tullio [dtc], Bruno Boulanger [ctb], Julien Vanwinsberghe [ctb]

Maintainer: Manon Martin <manon.martin at uclouvain.be>

Citation (from within R, enter citation("PepsNMR")):

Manon Martin, Bernadette Govaerts, Benoît Legat, Paul H.C. Eilers. PepsNMR: Pre-process 1H-NMR FID signals. doi:10.18129/B9.bioc.PepsNMR, R package version 1.31.0, https://bioconductor.org/packages/PepsNMR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("PepsNMR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PepsNMR")

Application of PepsNMR on the Human Serum dataset	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Metabolomics, Preprocessing, Software, Visualization
Version	1.31.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	GPL-2 \| file LICENSE
Depends	R (>= 3.6)
Imports	Matrix, ptw, ggplot2, gridExtra, matrixStats, reshape2, methods, graphics, stats
System Requirements
URL	https://github.com/ManonMartin/PepsNMR
Bug Reports	https://github.com/ManonMartin/PepsNMR/issues

Suggests	knitr, markdown, rmarkdown, BiocStyle, PepsNMRData
Linking To
Enhances
Depends On Me
Imports Me	ASICS
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PepsNMR_1.31.0.tar.gz
Windows Binary (x86_64)	PepsNMR_1.31.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	PepsNMR_1.31.0.tgz
macOS Binary (sonoma-arm64)	PepsNMR_1.31.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PepsNMR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PepsNMR
Package Short Url	https://bioconductor.org/packages/PepsNMR/
Package Downloads Report	Download Stats