OmaDB
This is the development version of OmaDB; for the stable release version, see OmaDB.
All Bioconductor versions of OmaDB
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7
R wrapper for the OMA REST API
Bioconductor version: 3.24 · Package version: 2.29.0
A package for the orthology prediction data download from OMA database.
Author: Klara Kaleb
Maintainer: Klara Kaleb <klara.kaleb18 at ic.ac.uk>, Adrian Altenhoff <adrian.altenhoff at inf.ethz.ch>
Citation
From within R, enter citation("OmaDB"):
Klara Kaleb. OmaDB: R wrapper for the OMA REST API. doi:10.18129/B9.bioc.OmaDB, R package version 2.29.0, https://bioconductor.org/packages/OmaDB.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("OmaDB")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.29.0 |
| License | GPL-3 |
| URL | https://github.com/DessimozLab/OmaDB |
| Bug Reports | https://github.com/DessimozLab/OmaDB/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.7 (R-3.5) (8 years) |
| Downloads rank | 1164 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, ComparativeGenomics, FunctionalGenomics, FunctionalPrediction, GO, Genetics, Software |
| Package Short Url | https://bioconductor.org/packages/OmaDB/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OmaDB")| Exploring Hierarchical orthologous groups with OmaDB | HTML | R Script |
| Exploring Taxonomic trees with OmaDB | HTML | R Script |
| Get started with OmaDB | HTML | R Script |
| Sequence Analysis with OmaDB | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | OmaDB_2.29.0.tar.gz |
| Windows binary (x86_64) | OmaDB_2.29.0.zip |
| macOS binary (arm64) | OmaDB_2.29.0.tgz |
| macOS binary (x86_64) | OmaDB_2.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OmaDB |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OmaDB |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5), httr (>= 1.2.1), plyr (>= 1.8.4)
Imports: utils, ape, Biostrings, GenomicRanges, IRanges, methods, topGO, jsonlite
Reverse dependencies
Suggests Me (2): orthogene, PhyloProfile