DOI: 10.18129/B9.bioc.MethylSeekR    

This is the development version of MethylSeekR; for the stable release version, see MethylSeekR.

Segmentation of Bis-seq data

Bioconductor version: Development (3.9)

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at>

Citation (from within R, enter citation("MethylSeekR")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("MethylSeekR", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script MethylSeekR
PDF   Reference Manual


biocViews DNAMethylation, MethylSeq, Sequencing, Software
Version 1.23.0
In Bioconductor since BioC 2.12 (R-3.0) (6 years)
License GPL (>=2)
Depends rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
Suggests BSgenome.Hsapiens.UCSC.hg18
Depends On Me
Imports Me
Suggests Me methylPipe
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package MethylSeekR_1.23.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) MethylSeekR_1.23.0.tgz
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Source Repository (Developer Access) git clone
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