MethylSeekR

Segmentation of Bis-seq data

Bioconductor version: 3.23 · Package version: 1.52.0

This is a package for the discovery of regulatory regions from Bis-seq data

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MethylSeekR")

Maintainer	Lukas Burger <Lukas.Burger@fmi.ch>
Author	Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler
License	GPL (>=2)
Downloads rank	535
Source branch	RELEASE_3_23
biocViews	DNAMethylation, MethylSeq, Sequencing, Software

Dependencies

Depends: rtracklayer (>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)

Imports: IRanges (>= 1.16.3), BSgenome (>= 1.26.1), GenomicRanges (>= 1.10.5), geneplotter (>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2), GenomeInfoDb

Suggests: BSgenome.Hsapiens.UCSC.hg38

Reverse dependencies

Suggests Me (2): methylPipe, RnBeads