MSPrep
This is the development version of MSPrep; for the stable release version, see MSPrep.
Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics Data
Bioconductor version: Development (3.20)
Package performs summarization of replicates, filtering by frequency, several different options for imputing missing data, and a variety of options for transforming, batch correcting, and normalizing data.
Author: Max McGrath [aut, cre], Matt Mulvahill [aut], Grant Hughes [aut], Sean Jacobson [aut], Harrison Pielke-lombardo [aut], Katerina Kechris [aut, cph, ths]
Maintainer: Max McGrath <max.mcgrath at ucdenver.edu>
citation("MSPrep")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MSPrep")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSPrep")
Using MSPrep | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | MassSpectrometry, Metabolomics, Preprocessing, Software |
Version | 1.15.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | GPL-3 |
Depends | R (>= 4.1.0) |
Imports | SummarizedExperiment, S4Vectors, pcaMethods(>= 1.24.0), crmn, preprocessCore, dplyr (>= 0.7), tidyr, tibble (>= 1.2), magrittr, rlang, stats, stringr, methods, missForest, sva, VIM |
System Requirements | |
URL | https://github.com/KechrisLab/MSPrep |
Bug Reports | https://github.com/KechrisLab/MSPrep/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 1.0.2) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MSPrep_1.15.0.tar.gz |
Windows Binary | MSPrep_1.15.0.zip |
macOS Binary (x86_64) | MSPrep_1.15.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/MSPrep |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MSPrep |
Bioc Package Browser | https://code.bioconductor.org/browse/MSPrep/ |
Package Short Url | https://bioconductor.org/packages/MSPrep/ |
Package Downloads Report | Download Stats |