Herper

This is the development version of Herper; for the stable release version, see Herper.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

The Herper package is a simple toolset to install and manage conda packages and environments from R

Bioconductor version: Development (3.24)

Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.

Author: Matt Paul [aut] ORCID: 0000-0002-3020-7729 , Thomas Carroll [aut, cre] ORCID: 0000-0002-0073-1714 , Doug Barrows [aut], Kathryn Rozen-Gagnon [ctb]

Maintainer: Thomas Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("Herper")):

Matt Paul, Thomas Carroll, Doug Barrows. Herper: The Herper package is a simple toolset to install and manage conda packages and environments from R. doi:10.18129/B9.bioc.Herper, R package version 1.23.0, https://bioconductor.org/packages/Herper.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("Herper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Herper")

Quick Start	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.23.0
In Bioconductor since	BioC 3.12 (R-4.0) (6 years)
License	GPL-3
Depends	R (>= 4.0), reticulate
Imports	utils, rjson, withr, stats
System Requirements
URL	https://github.com/RockefellerUniversity/Herper

Suggests	BiocStyle, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Herper_1.23.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)	Herper_1.23.0.tgz
macOS Binary (sonoma-arm64)	Herper_1.23.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Herper
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Herper
Package Short Url	https://bioconductor.org/packages/Herper/
Package Downloads Report	Download Stats