GMRP

This is the development version of GMRP; for the stable release version, see GMRP.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

GWAS-based Mendelian Randomization and Path Analyses

Bioconductor version: Development (3.24)

Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

Author: Yuan-De Tan

Maintainer: Yuan-De Tan <tanyuande at gmail.com>

Citation (from within R, enter citation("GMRP")):

Yuan-De Tan. GMRP: GWAS-based Mendelian Randomization and Path Analyses. doi:10.18129/B9.bioc.GMRP, R package version 1.41.0, https://bioconductor.org/packages/GMRP.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("GMRP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GMRP")

GMRP-manual.pdf	PDF
Causal Effect Analysis of Risk Factors for Disease with the "GMRP" package	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Regression, SNP, Sequencing, Software
Version	1.41.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL (>= 2)
Depends	R (>= 3.3.0), stats, utils, graphics, grDevices, diagram, plotrix, base, GenomicRanges
Imports
System Requirements
URL

Suggests	BiocStyle, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GMRP_1.41.0.tar.gz
Windows Binary (x86_64)	GMRP_1.41.0.zip
macOS Binary (big-sur-x86_64)	GMRP_1.41.0.tgz
macOS Binary (sonoma-arm64)	GMRP_1.41.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GMRP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GMRP
Package Short Url	https://bioconductor.org/packages/GMRP/
Package Downloads Report	Download Stats