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FuseSOM

This is the development version of FuseSOM; for the stable release version, see FuseSOM.

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3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16

A Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets

DOI: 10.18129/B9.bioc.FuseSOM

Bioconductor version: Development (3.24)

A correlation-based multiview self-organizing map for the characterization of cell types in highly multiplexed in situ imaging cytometry assays (`FuseSOM`) is a tool for unsupervised clustering. `FuseSOM` is robust and achieves high accuracy by combining a `Self Organizing Map` architecture and a `Multiview` integration of correlation based metrics. This allows FuseSOM to cluster highly multiplexed in situ imaging cytometry assays.

Author: Elijah Willie [aut, cre]

Maintainer: Elijah Willie <ewil3501 at uni.sydney.edu.au>

Citation (from within R, enter citation("FuseSOM")):

Elijah Willie. FuseSOM: A Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets. doi:10.18129/B9.bioc.FuseSOM, R package version 1.15.0, https://bioconductor.org/packages/FuseSOM.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("FuseSOM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FuseSOM")

Details

Package Archives

Follow Installation instructions to use this package in your R session.