DOI: 10.18129/B9.bioc.FuseSOM    

This is the development version of FuseSOM; for the stable release version, see FuseSOM.

A Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets

Bioconductor version: Development (3.17)

A correlation-based multiview self-organizing map for the characterization of cell types in highly multiplexed in situ imaging cytometry assays (`FuseSOM`) is a tool for unsupervised clustering. `FuseSOM` is robust and achieves high accuracy by combining a `Self Organizing Map` architecture and a `Multiview` integration of correlation based metrics. This allows FuseSOM to cluster highly multiplexed in situ imaging cytometry assays.

Author: Elijah Willie [aut, cre]

Maintainer: Elijah Willie <ewil3501 at uni.sydney.edu.au>

Citation (from within R, enter citation("FuseSOM")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script FuseSOM package manual
PDF   Reference Manual
Text   NEWS


biocViews CellBasedAssays, Clustering, SingleCell, Software, Spatial
Version 1.1.2
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License GPL-2
Depends R (>= 4.2.0)
Imports psych, FCPS, analogue, coop, pheatmap, ggplotify, fastcluster, fpc, ggplot2, stringr, ggpubr, proxy, cluster, diptest, methods, SummarizedExperiment, stats, S4Vectors
LinkingTo Rcpp
Suggests knitr, rmarkdown, SingleCellExperiment
BugReports https://github.com/ecool50/FuseSOM/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FuseSOM_1.1.2.tar.gz
Windows Binary FuseSOM_1.1.2.zip
macOS Binary (x86_64) FuseSOM_1.1.2.tgz
macOS Binary (arm64) FuseSOM_1.1.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/FuseSOM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FuseSOM
Bioc Package Browser https://code.bioconductor.org/browse/FuseSOM/
Package Short Url https://bioconductor.org/packages/FuseSOM/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: