CTDquerier

This is the development version of CTDquerier; for the stable release version, see CTDquerier.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.11, 3.10, 3.9, 3.8, 3.7

Package for CTDbase data query, visualization and downstream analysis

Bioconductor version: Development (3.24)

Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.

Author: Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut], Xavier Escribà-Montagut [cre]

Maintainer: Xavier Escribà-Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("CTDquerier")):

Carles Hernandez-Ferrer, Juan R. Gonzalez. CTDquerier: Package for CTDbase data query, visualization and downstream analysis. doi:10.18129/B9.bioc.CTDquerier, R package version 2.21.0, https://bioconductor.org/packages/CTDquerier.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("CTDquerier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software
Version	2.21.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.1)
Imports	RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CTDquerier_2.21.0.tar.gz
Windows Binary (x86_64)	CTDquerier_2.21.0.zip
macOS Binary (big-sur-x86_64)	CTDquerier_2.21.0.tgz
macOS Binary (sonoma-arm64)	CTDquerier_2.21.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CTDquerier
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CTDquerier
Package Short Url	https://bioconductor.org/packages/CTDquerier/
Package Downloads Report	Download Stats