BasicSTARRseq
This is the development version of BasicSTARRseq; for the stable release version, see BasicSTARRseq.
All Bioconductor versions of BasicSTARRseq
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3
Basic peak calling on STARR-seq data
Bioconductor version: 3.24 · Package version: 1.41.0
Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.
Author: Annika Buerger
Maintainer: Annika Buerger <annika.buerger at ukmuenster.de>
Citation
From within R, enter citation("BasicSTARRseq"):
Annika Buerger. BasicSTARRseq: Basic peak calling on STARR-seq data. doi:10.18129/B9.bioc.BasicSTARRseq, R package version 1.41.0, https://bioconductor.org/packages/BasicSTARRseq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("BasicSTARRseq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.41.0 |
| License | LGPL-3 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.3 (R-3.3) (10 years) |
| Downloads rank | 1534 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Coverage, FunctionalGenomics, FunctionalPrediction, GeneRegulation, PeakDetection, Software |
| Package Short Url | https://bioconductor.org/packages/BasicSTARRseq/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BasicSTARRseq")| A R/Bioconductor package for basic peak calling on STARR-seq data | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | BasicSTARRseq_1.41.0.tar.gz |
| Windows binary (x86_64) | BasicSTARRseq_1.41.0.zip |
| macOS binary (arm64) | BasicSTARRseq_1.41.0.tgz |
| macOS binary (x86_64) | BasicSTARRseq_1.41.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BasicSTARRseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BasicSTARRseq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: GenomicRanges, GenomicAlignments
Imports: S4Vectors, methods, IRanges, Seqinfo, stats
Suggests: knitr