AnVILAz

This is the development version of AnVILAz; to use it, please install the devel version of Bioconductor.

R / Bioconductor Support for the AnVIL Azure Platform


Bioconductor version: Development (3.20)

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVILAz package supports end-users and developers using the AnVIL platform in the Azure cloud. The package provides a programmatic interface to AnVIL resources, including workspaces, notebooks, tables, and workflows. The package also provides utilities for managing resources, including copying files to and from Azure Blob Storage, and creating shared access signatures (SAS) for secure access to Azure resources.

Author: Martin Morgan [aut, ctb] , Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("AnVILAz")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnVILAz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILAz")
Introduction to the AnVILAz package HTML R Script
Working with Workspaces on AnVIL Azure HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software, ThirdPartyClient
Version 0.99.21
In Bioconductor since BioC 3.20 (R-4.4)
License Artistic-2.0
Depends
Imports AnVILBase, BiocBaseUtils, curl, httr2, jsonlite, methods, rjsoncons, tibble, utils
System Requirements az, azcopy
URL https://github.com/Bioconductor/AnVILAz
Bug Reports https://github.com/Bioconductor/AnVILAz/issues
See More
Suggests BiocStyle, dplyr, knitr, readr, rmarkdown, tinytest
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me AnVIL, AnVILBase
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVILAz_0.99.21.tar.gz
Windows Binary (x86_64) AnVILAz_0.99.21.zip
macOS Binary (x86_64) AnVILAz_0.99.21.tgz
macOS Binary (arm64) AnVILAz_0.99.21.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnVILAz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnVILAz
Bioc Package Browser https://code.bioconductor.org/browse/AnVILAz/
Package Short Url https://bioconductor.org/packages/AnVILAz/
Package Downloads Report Download Stats