Chromatograms
Infrastructure for Chromatographic Mass Spectrometry Data
Bioconductor version: 3.24 · Package version: 1.3.3
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The Chromatograms packages defines an efficient infrastructure for storing and handling of chromatographic mass spectrometry data. It provides different implementations of *backends* to store and represent the data. Such backends can be optimized for small memory footprint or fast data access/processing. A lazy evaluation queue and chunk-wise processing capabilities ensure efficient analysis of also very large data sets.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Chromatograms")Details
| Maintainer | Philippine Louail <philippine.louail@outlook.com> |
| Author | Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Philippine Louail [aut, cre] (ORCID: <https://orcid.org/0009-0007-5429-6846>, fnd: European Union HORIZON-MSCA-2021 project Grant No. 101073062: HUMAN – Harmonising and Unifying Blood Metabolic Analysis Networks) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/Chromatograms |
| Bug Reports | https://github.com/RforMassSpectrometry/Chromatograms/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/Chromatograms/ |
Citation
From within R, enter citation("Chromatograms"):
Johannes Rainer, Laurent Gatto, Philippine Louail. Chromatograms: Infrastructure for Chromatographic Mass Spectrometry Data. doi:10.18129/B9.bioc.Chromatograms, R package version 1.3.3, https://bioconductor.org/packages/Chromatograms.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Chromatograms_1.3.3.tar.gz |
| Windows binary (x86_64) | Chromatograms_1.3.3.zip |
| macOS binary (arm64) | Chromatograms_1.3.3.tgz |
| macOS binary (x86_64) | Chromatograms_1.3.3.tgz |
Dependencies
Depends: BiocParallel, ProtGenerics (>= 1.39.2), R (>= 4.5.0)
Imports: data.table, methods, S4Vectors, MsCoreUtils (>= 1.7.5), Spectra
Suggests: MsDataHub, roxygen2, BiocStyle (>= 2.5.19), testthat, knitr (>= 1.1.0), rmarkdown, mzR (>= 2.41.4), MsBackendMetaboLights (>= 1.3.1), pheatmap, vdiffr, IRanges, RColorBrewer