davidTiling
Data and analysis scripts for David, Huber et al. yeast tiling array paper
Bioconductor version: 3.23 · Package version: 1.52.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("davidTiling")Details
| Maintainer | Wolfgang Huber <huber@ebi.ac.uk> |
| Author | Wolfgang Huber <huber@ebi.ac.uk>, Joern Toedling <toedling@ebi.ac.uk> |
| License | LGPL |
| URL | http://www.ebi.ac.uk/huber |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, Genome, MicroarrayData, ReproducibleResearch, Saccharomyces_cerevisiae_Data |
| Package Short Url | https://bioconductor.org/packages/davidTiling/ |
Citation
From within R, enter citation("davidTiling"):
Wolfgang Huber, Joern Toedling. davidTiling: Data and analysis scripts for David, Huber et al. yeast tiling array paper. doi:10.18129/B9.bioc.davidTiling, R package version 1.52.0, https://bioconductor.org/packages/davidTiling.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | davidTiling_1.52.0.tar.gz |
Dependencies
Depends: R (>= 2.10), Biobase (>= 2.5.5), tilingArray, GO.db