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cydar

This is the released version of cydar; for the devel version, see cydar.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

Using Mass Cytometry for Differential Abundance Analyses

DOI: 10.18129/B9.bioc.cydar

Bioconductor version: Release (3.23)

Identifies differentially abundant populations between samples and groups in mass cytometry data. Provides methods for counting cells into hyperspheres, controlling the spatial false discovery rate, and visualizing changes in abundance in the high-dimensional marker space.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("cydar")):

Aaron Lun. cydar: Using Mass Cytometry for Differential Abundance Analyses. doi:10.18129/B9.bioc.cydar, R package version 1.36.0, https://bioconductor.org/packages/cydar.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cydar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cydar")

Details

Package Archives

Follow Installation instructions to use this package in your R session.