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cqn

This is the released version of cqn; for the devel version, see cqn.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9

Conditional quantile normalization

DOI: 10.18129/B9.bioc.cqn

Bioconductor version: Release (3.23)

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Author: Jean (Zhijin) Wu, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("cqn")):

Jean Wu, Kasper Daniel Hansen. cqn: Conditional quantile normalization. doi:10.18129/B9.bioc.cqn, R package version 1.58.0, https://bioconductor.org/packages/cqn.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cqn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cqn")

Details

Package Archives

Follow Installation instructions to use this package in your R session.