banocc
This is the released version of banocc; for the devel version, see banocc.
Bayesian ANalysis Of Compositional Covariance
Bioconductor version: Release (3.23)
BAnOCC is a package designed for compositional data, where each sample sums to one. It infers the approximate covariance of the unconstrained data using a Bayesian model coded with `rstan`. It provides as output the `stanfit` object as well as posterior median and credible interval estimates for each correlation element.
Author: Emma Schwager [aut, cre], Curtis Huttenhower [aut]
Maintainer: George Weingart <george.weingart at gmail.com>, Curtis Huttenhower <chuttenh at hsph.harvard.edu>
citation("banocc")):Emma Schwager, Curtis Huttenhower. banocc: Bayesian ANalysis Of Compositional Covariance. doi:10.18129/B9.bioc.banocc, R package version 1.36.0, https://bioconductor.org/packages/banocc.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("banocc")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("banocc")| BAnOCC (Bayesian Analysis of Compositional Covariance) | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Bayesian, ImmunoOncology, Metagenomics, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (9.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.1), rstan (>= 2.17.4) |
| Imports | coda (>= 0.18.1), mvtnorm, stringr |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, methods, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | banocc_1.36.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | banocc_1.36.0.tgz |
| macOS Binary (sonoma-arm64) | banocc_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/banocc |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/banocc |
| Package Short Url | https://bioconductor.org/packages/banocc/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |