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alabaster.string

This is the released version of alabaster.string; for the devel version, see alabaster.string.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

Save and Load Biostrings to/from File


Bioconductor version: Release (3.23)

Save Biostrings objects to file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.string")):

Aaron Lun. alabaster.string: Save and Load Biostrings to/from File. doi:10.18129/B9.bioc.alabaster.string, R package version 1.12.0, https://bioconductor.org/packages/alabaster.string.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.string")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.string")
Saving and loading XStringSets HTML R Script
Reference ManualPDF
LICENSEText

Details

biocViews DataImport, DataRepresentation, Software
Version1.12.0
In Bioconductor sinceBioC 3.17 (R-4.3) (3.5 years)
License MIT + file LICENSE
Depends Biostrings, alabaster.base
Imports utils, methods, S4Vectors
System Requirements
URL
See More
Suggests BiocStyle, rmarkdown, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me alabaster, alabaster.vcf
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.string_1.12.0.tar.gz
Windows Binary (x86_64) alabaster.string_1.12.0.zip
macOS Binary (big-sur-x86_64) alabaster.string_1.12.0.tgz
macOS Binary (sonoma-arm64) alabaster.string_1.12.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/alabaster.string
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/alabaster.string
Package Short Url https://bioconductor.org/packages/alabaster.string/
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