affyio

This is the released version of affyio; for the devel version, see affyio.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Tools for parsing Affymetrix data files

Bioconductor version: Release (3.23)

Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.

Author: Ben Bolstad <bmb at bmbolstad.com>

Maintainer: Ben Bolstad <bmb at bmbolstad.com>

Citation (from within R, enter citation("affyio")):

Ben Bolstad. affyio: Tools for parsing Affymetrix data files. doi:10.18129/B9.bioc.affyio, R package version 1.82.0, https://bioconductor.org/packages/affyio.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyio")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Infrastructure, Microarray, Software
Version	1.82.0
In Bioconductor since	BioC 1.8 (R-2.3) (20.5 years)
License	LGPL (>= 2)
Depends	R (>= 2.6.0)
Imports	methods
System Requirements
URL	https://github.com/bmbolstad/affyio

Suggests
Linking To
Enhances
Depends On Me	makecdfenv, SCAN.UPC
Imports Me	affy, affylmGUI, crlmm, ExiMiR, gcrma, oligo, oligoClasses, puma
Suggests Me	BufferedMatrixMethods
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affyio_1.82.0.tar.gz
Windows Binary (x86_64)	affyio_1.82.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	affyio_1.82.0.tgz
macOS Binary (sonoma-arm64)	affyio_1.82.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affyio
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affyio
Package Short Url	https://bioconductor.org/packages/affyio/
Package Downloads Report	Download Stats