XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
This is the released version of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38; for the devel version, see XtraSNPlocs.Hsapiens.dbSNP144.GRCh38.
All Bioconductor versions of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1
Extra SNP locations for Homo sapiens (dbSNP Build 144)
Bioconductor version: 3.23 · Package version: 0.99.12
Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).
Author: Herve Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation
From within R, enter citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"):
Herve Pages. XtraSNPlocs.Hsapiens.dbSNP144.GRCh38: Extra SNP locations for Homo sapiens (dbSNP Build 144). doi:10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, R package version 0.99.12, https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP144.GRCh38")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 0.99.12 |
| License | Artistic-2.0 |
| Last updated | 2015-07-31 |
| In Bioconductor since | BioC 3.1 (R-3.2) (11 years) |
| Downloads rank | 95 of 928 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs |
| Package Short Url | https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38/ |
Documentation
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | XtraSNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.12.tar.gz |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.10), BSgenome
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh38
Reverse dependencies
Suggests Me (1): BSgenome