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TxDb.Athaliana.Ensembl.TAIR10

This is the development version of TxDb.Athaliana.Ensembl.TAIR10; to use it, please install the devel version of Bioconductor.

Transcripts Annotation Database for Arabidopsis thaliana

DOI: 10.18129/B9.bioc.TxDb.Athaliana.Ensembl.TAIR10

Bioconductor version: Development (3.24)

TxDb.Athaliana.Ensembl.TAIR10 provides transcript, exon, CDS, and gene annotations for Arabidopsis thaliana based on the TAIR10 reference genome and Ensembl Plants release 63. The TxDb object is built from the official Ensembl Plants GFF3 annotation and distributed through AnnotationHub. Standard GenomicFeatures accessors such as genes(), transcripts(), exonsBy(), and cdsBy() can be used to query and extract gene models.

Author: Dwijesh Chandra Mishra [aut] ORCID: 0000-0002-3327-6156 , Kabilan S [aut, cre] ORCID: 0009-0002-9422-0938 , ICAR-IARI [fnd]

Maintainer: Kabilan S <kabilan151414 at gmail.com>

Citation (from within R, enter citation("TxDb.Athaliana.Ensembl.TAIR10")):

Dwijesh Chandra Mishra, Kabilan S. TxDb.Athaliana.Ensembl.TAIR10: Transcripts Annotation Database for Arabidopsis thaliana. doi:10.18129/B9.bioc.TxDb.Athaliana.Ensembl.TAIR10, R package version 0.99.7, https://bioconductor.org/packages/TxDb.Athaliana.Ensembl.TAIR10.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TxDb.Athaliana.Ensembl.TAIR10")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TxDb.Athaliana.Ensembl.TAIR10")

Details

Package Archives

Follow Installation instructions to use this package in your R session.