SummarizedHeatmap
This is the development version of SummarizedHeatmap; to use it, please install the devel version of Bioconductor.
Heatmaps for SummarizedExperiment Objects
Bioconductor version: Development (3.24)
Represents a heatmap as a SummarizedExperiment-derived object, holding a single assay together with its row and column annotations and any hierarchical clustering. Assay values, annotations, display order, and dendrograms stay synchronized as the object is subsetted or reclustered, so a heatmap's components cannot drift out of step with each other. Each visual component (the main heatmap, annotation strips, dendrograms) is returned as an ordinary ggplot2 plot, and these can be composed, laid out, and customized using patchwork.
Author: Bradley Blaser [aut, cre] 
Maintainer: Bradley Blaser <bradley.blaser at osumc.edu>
citation("SummarizedHeatmap")):Bradley Blaser. SummarizedHeatmap: Heatmaps for SummarizedExperiment Objects. doi:10.18129/B9.bioc.SummarizedHeatmap, R package version 0.99.0, https://bioconductor.org/packages/SummarizedHeatmap.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("SummarizedHeatmap")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SummarizedHeatmap")| A Bioconductor-Native, Composable Heatmap | HTML |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Clustering, Software, Visualization |
| Version | 0.99.0 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | ggdendro, ggplot2, methods, patchwork, S4Vectors, stats, SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/blaserlab/SummarizedHeatmap |
| Bug Reports | https://github.com/blaserlab/SummarizedHeatmap/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SummarizedHeatmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SummarizedHeatmap |
| Package Short Url | https://bioconductor.org/packages/SummarizedHeatmap/ |
| Package Downloads Report | Download Stats |