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SplicingGraphs

This is the released version of SplicingGraphs; for the devel version, see SplicingGraphs.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

DOI: 10.18129/B9.bioc.SplicingGraphs

Bioconductor version: Release (3.23)

This package allows the user to create, manipulate, and visualize splicing graphs and their bubbles based on a gene model for a given organism. Additionally it allows the user to assign RNA-seq reads to the edges of a set of splicing graphs, and to summarize them in different ways.

Author: D. Bindreither, M. Carlson, M. Morgan, H. Pagès

Maintainer: H. Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("SplicingGraphs")):

D. Bindreither, M. Carlson, M. Morgan, H. Pagès. SplicingGraphs: Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them. doi:10.18129/B9.bioc.SplicingGraphs, R package version 1.52.0, https://bioconductor.org/packages/SplicingGraphs.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SplicingGraphs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SplicingGraphs")

Details

Package Archives

Follow Installation instructions to use this package in your R session.