SMTrackR
This is the development version of SMTrackR; to use it, please install the devel version of Bioconductor.
SMTrackR: a R/Bioconductor package for mapping protein binding at individual DNA molecules
Bioconductor version: Development (3.23)
The package uses exogenous enzyme imprinted information to map protein-DNA binding on individual sequenced DNA molecules. For example, GpC methyltransferase, CpG methyltransferase, and Adenine methyltransferases. Public datasets from such assays are compiled into tracks, and hosted at public servers like Galaxy for their seamless access by this package.
Author: Aashna Bansal [aut, ctb], Himani Barmola [aut, ctb], Shivam K Yadav [aut, ctb], Satyanarayan Rao [aut, cre]
Maintainer: Satyanarayan Rao <satyanarayan.rao at bt.iitr.ac.in>
citation("SMTrackR")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SMTrackR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | GeneTarget, GenomeAssembly, NucleosomePositioning, Software, Visualization |
| Version | 0.99.5 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5) |
| Imports | jsonlite, GenomicRanges, rtracklayer, stringr, BiocFileCache, S4Vectors |
| System Requirements | |
| URL | https://www.raolab.in |
| Bug Reports | https://www.raolab.in |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | SMTrackR_0.99.5.tgz |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SMTrackR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SMTrackR |
| Bioc Package Browser | https://code.bioconductor.org/browse/SMTrackR/ |
| Package Short Url | https://bioconductor.org/packages/SMTrackR/ |
| Package Downloads Report | Download Stats |