SMTrackR
This is the released version of SMTrackR; for the devel version, see SMTrackR.
SMTrackR: an R/Bioconductor package for mapping protein binding at individual DNA molecules
Bioconductor version: Release (3.23)
The package uses exogenous enzyme imprinted information to map protein-DNA binding on individual sequenced DNA molecules. For example, GpC methyltransferase, CpG methyltransferase, and Adenine methyltransferases. Public datasets from such assays are compiled into tracks, and hosted at public servers like Galaxy for their seamless access by this package.
Author: Aashna Bansal [aut, ctb], Himani Barmola [aut, ctb], Shivam Yadav [aut, ctb], Satyanarayan Rao [aut, cre] 
Maintainer: Satyanarayan Rao <satyanarayan.rao at bt.iitr.ac.in>
citation("SMTrackR")):Aashna Bansal, Himani Barmola, Shivam Yadav, Satyanarayan Rao. SMTrackR: SMTrackR: an R/Bioconductor package for mapping protein binding at individual DNA molecules. doi:10.18129/B9.bioc.SMTrackR, R package version 1.0.0, https://bioconductor.org/packages/SMTrackR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SMTrackR")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SMTrackR")| reference_manual.html | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneTarget, GenomeAssembly, NucleosomePositioning, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5) |
| Imports | jsonlite, GenomicRanges, rtracklayer, stringr, BiocFileCache, S4Vectors |
| System Requirements | |
| URL | https://www.raolab.in |
| Bug Reports | https://github.com/satyanarayan-rao/SMTrackR |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SMTrackR_1.0.0.tar.gz |
| Windows Binary (x86_64) | SMTrackR_1.0.0.zip |
| macOS Binary (big-sur-x86_64) | SMTrackR_1.0.0.tgz |
| macOS Binary (sonoma-arm64) | SMTrackR_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SMTrackR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SMTrackR |
| Package Short Url | https://bioconductor.org/packages/SMTrackR/ |
| Package Downloads Report | Download Stats |