Rega
This is the released version of Rega; for the devel version, see Rega.
R Interface to European Genome-Phenome Archive
Bioconductor version: Release (3.23)
The European Genome-phenome Archive (EGA) provides long-term storage and controlled sharing of personally identifiable genetic data. The Rega package offers a streamlined and extensible R interface to the EGA API, facilitating the programmatic upload of metadata. GEO-like Excel submission template is provided as a default method of organizing submission metadata.
Author: Igor Cervenka [aut, cre] 
, Athimed El Taher [aut] , Robert Ivanek [aut]
Maintainer: Igor Cervenka <igor.cervenka at unibas.ch>
citation("Rega")):Igor Cervenka, Athimed El Taher, Robert Ivanek. Rega: R Interface to European Genome-Phenome Archive. doi:10.18129/B9.bioc.Rega, R package version 1.0.2, https://bioconductor.org/packages/Rega.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rega")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rega")| The Rega User Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software, ThirdPartyClient |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5) |
| Imports | askpass, httr2, jsonlite, jsonvalidate, keyring, readxl, rlang, stringr, tibble, tidyr, validate, yaml |
| System Requirements | |
| URL | https://github.com/ivanek/Rega |
| Bug Reports | https://github.com/ivanek/Rega/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rega_1.0.2.tar.gz |
| Windows Binary (x86_64) | Rega_1.0.2.zip |
| macOS Binary (big-sur-x86_64) | Rega_1.0.2.tgz |
| macOS Binary (sonoma-arm64) | Rega_1.0.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rega |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rega |
| Package Short Url | https://bioconductor.org/packages/Rega/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |