ROTS

This is the released version of ROTS; for the devel version, see ROTS.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Reproducibility-Optimized Test Statistic

Bioconductor version: Release (3.23)

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo

Maintainer: Tomi Suomi <tomi.suomi at utu.fi>

Citation (from within R, enter citation("ROTS")):

Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo. ROTS: Reproducibility-Optimized Test Statistic. doi:10.18129/B9.bioc.ROTS, R package version 2.4.0, https://bioconductor.org/packages/ROTS.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ROTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ROTS")

ROTS: Reproducibility Optimized Test Statistic	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, Proteomics, RNASeq, Software
Version	2.4.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL (>= 2)
Depends	R (>= 3.6)
Imports	Rcpp, stats, Biobase, methods, BiocParallel, lme4, survival
System Requirements
URL

Suggests	testthat
Linking To	Rcpp
Enhances
Depends On Me
Imports Me	PECA, PRONE, RolDE
Suggests Me	LimROTS, wrProteo
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ROTS_2.4.0.tar.gz
Windows Binary (x86_64)	ROTS_2.4.0.zip
macOS Binary (big-sur-x86_64)	ROTS_2.4.0.tgz
macOS Binary (sonoma-arm64)	ROTS_2.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ROTS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ROTS
Package Short Url	https://bioconductor.org/packages/ROTS/
Package Downloads Report	Download Stats