RDRToolbox
This is the released version of RDRToolbox; for the devel version, see RDRToolbox.
A package for nonlinear dimension reduction with Isomap and LLE.
Bioconductor version: Release (3.23)
A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>
citation("RDRToolbox")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RDRToolbox")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RDRToolbox")| A package for nonlinear dimension reduction with Isomap and LLE. | R Script | |
| Reference Manual |
Details
| biocViews | Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization |
| Version | 1.62.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (16 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.9.0) |
| Imports | graphics, grDevices, methods, stats, MASS, rgl |
| System Requirements | |
| URL |
See More
| Suggests | golubEsets |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | loon |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RDRToolbox_1.62.0.tar.gz |
| Windows Binary (x86_64) | RDRToolbox_1.62.0.zip |
| macOS Binary (big-sur-x86_64) | RDRToolbox_1.62.0.tgz |
| macOS Binary (sonoma-arm64) | RDRToolbox_1.62.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RDRToolbox |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RDRToolbox |
| Bioc Package Browser | https://code.bioconductor.org/browse/RDRToolbox/ |
| Package Short Url | https://bioconductor.org/packages/RDRToolbox/ |
| Package Downloads Report | Download Stats |