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MouseGastrulationData

This is the released version of MouseGastrulationData; for the devel version, see MouseGastrulationData.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis


Bioconductor version: Release (3.23)

Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

Author: Jonathan Griffiths [aut, cre], Aaron Lun [aut]

Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>

Citation (from within R, enter citation("MouseGastrulationData")):

Jonathan Griffiths, Aaron Lun. MouseGastrulationData: Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis. doi:10.18129/B9.bioc.MouseGastrulationData, R package version 1.26.0, https://bioconductor.org/packages/MouseGastrulationData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseGastrulationData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseGastrulationData")
Available datasets HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData
Version1.26.0
In Bioconductor sinceBioC 3.10 (R-3.6) (7 years)
License GPL-3
Depends R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment
Imports methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix
System Requirements
URLhttps://github.com/MarioniLab/MouseGastrulationData
Bug Reportshttps://github.com/MarioniLab/MouseGastrulationData/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me Coralysis, miloR
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseGastrulationData_1.26.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/MouseGastrulationData
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/MouseGastrulationData
Package Short Url https://bioconductor.org/packages/MouseGastrulationData/
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