MEDME

This is the released version of MEDME; for the devel version, see MEDME.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Modelling Experimental Data from MeDIP Enrichment

Bioconductor version: Release (3.23)

MEDME allows the prediction of absolute and relative methylation levels based on measures obtained by MeDIP-microarray experiments

Author: Mattia Pelizzola and Annette Molinaro

Maintainer: Mattia Pelizzola <mattia.pelizzola at gmail.com>

Citation (from within R, enter citation("MEDME")):

Mattia Pelizzola and Annette Molinaro. MEDME: Modelling Experimental Data from MeDIP Enrichment. doi:10.18129/B9.bioc.MEDME, R package version 1.72.0, https://bioconductor.org/packages/MEDME.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MEDME")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MEDME")

MEDME.pdf	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CpGIsland, DNAMethylation, Microarray, Software
Version	1.72.0
In Bioconductor since	BioC 2.3 (R-2.8) (18 years)
License	GPL (>= 2)
Depends	R (>= 2.15), grDevices, graphics, methods, stats, utils
Imports	Biostrings, MASS, drc
System Requirements
URL

Suggests	BSgenome.Hsapiens.UCSC.hg18, BSgenome.Mmusculus.UCSC.mm9
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MEDME_1.72.0.tar.gz
Windows Binary (x86_64)	MEDME_1.72.0.zip
macOS Binary (big-sur-x86_64)	MEDME_1.72.0.tgz
macOS Binary (sonoma-arm64)	MEDME_1.72.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MEDME
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MEDME
Package Short Url	https://bioconductor.org/packages/MEDME/
Package Downloads Report	Download Stats