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IMMAN

This is the released version of IMMAN; for the devel version, see IMMAN.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Interlog protein network reconstruction by Mapping and Mining ANalysis


Bioconductor version: Release (3.23)

Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.

Author: Minoo Ashtiani, Payman Nickchi, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari

Maintainer: Minoo Ashtiani <ashtiani.minoo at gmail.com>

Citation (from within R, enter citation("IMMAN")):

Minoo Ashtiani, Payman Nickchi, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari. IMMAN: Interlog protein network reconstruction by Mapping and Mining ANalysis. doi:10.18129/B9.bioc.IMMAN, R package version 1.32.0, https://bioconductor.org/packages/IMMAN.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IMMAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IMMAN")
IMMAN HTML R Script
Reference ManualPDF

Details

biocViews Alignment, GraphAndNetwork, Network, Proteomics, SequenceMatching, Software, SystemsBiology
Version1.32.0
In Bioconductor sinceBioC 3.7 (R-3.5) (8.5 years)
License Artistic-2.0
Depends
Imports STRINGdb, pwalign, igraph, graphics, utils, seqinr
System Requirements
URL
See More
Suggests knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IMMAN_1.32.0.tar.gz
Windows Binary (x86_64) IMMAN_1.32.0.zip
macOS Binary (big-sur-x86_64) IMMAN_1.32.0.tgz
macOS Binary (sonoma-arm64) IMMAN_1.32.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/IMMAN
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/IMMAN
Package Short Url https://bioconductor.org/packages/IMMAN/
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