IMAS

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.23 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see IMAS.

All versions

3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

Integrative analysis of Multi-omics data for Alternative Splicing

Bioconductor version: Release (3.23)

Integrative analysis of Multi-omics data for Alternative splicing.

Author: Seonggyun Han, Younghee Lee

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IMAS")):

Seonggyun Han, Younghee Lee. IMAS: Integrative analysis of Multi-omics data for Alternative Splicing. doi:10.18129/B9.bioc.IMAS, R package version 1.36.0, https://bioconductor.org/packages/IMAS.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IMAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version	1.36.0
In Bioconductor since	BioC 3.5 (R-3.4) (9.5 years)
License	GPL-2
Depends	R (> 3.0.0), GenomicFeatures, ggplot2, IVAS
Imports	doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, Seqinfo, stats, ggfortify, grDevices, methods, Matrix, utils, graphics, gridExtra, grid, lattice, Rsamtools, survival, BiocParallel, GenomicAlignments, parallel
System Requirements
URL

Suggests	BiocStyle, RUnit
Linking To
Enhances
Depends On Me
Imports Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)	IMAS_1.35.1.zip
macOS Binary (big-sur-x86_64)	IMAS_1.35.0.tgz
macOS Binary (sonoma-arm64)	IMAS_1.35.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IMAS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IMAS
Package Short Url	https://bioconductor.org/packages/IMAS/
Package Downloads Report	Download Stats