IHW
This is the released version of IHW; for the devel version, see IHW.
Independent Hypothesis Weighting
DOI: 10.18129/B9.bioc.IHW
Bioconductor version: Release (3.23)
Independent hypothesis weighting (IHW) is a multiple testing procedure that increases power compared to the method of Benjamini and Hochberg by assigning data-driven weights to each hypothesis. The input to IHW is a two-column table of p-values and covariates. The covariate can be any continuous-valued or categorical variable that is thought to be informative on the statistical properties of each hypothesis test, while it is independent of the p-value under the null hypothesis.
Author: Nikos Ignatiadis [aut, cre], Wolfgang Huber [aut]
Maintainer: Nikos Ignatiadis <nikos.ignatiadis01 at gmail.com>
citation("IHW")):Nikos Ignatiadis, Wolfgang Huber. IHW: Independent Hypothesis Weighting. doi:10.18129/B9.bioc.IHW, R package version 1.40.0, https://bioconductor.org/packages/IHW.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IHW")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IHW")| Introduction to Independent Hypothesis Weighting with the IHW Package | HTML | R Script |
| Reference Manual |
Details
| biocViews | ImmunoOncology, MultipleComparison, RNASeq, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0) |
| Imports | methods, slam, lpsymphony, fdrtool, BiocGenerics |
| System Requirements | |
| URL |
See More
| Suggests | ggplot2, dplyr, gridExtra, scales, DESeq2, airway, testthat, Matrix, BiocStyle, knitr, rmarkdown, devtools |
| Linking To | |
| Enhances | |
| Depends On Me | IHWpaper |
| Imports Me | ideal, scp |
| Suggests Me | DEWSeq, DGEobj.utils, GRaNIE, metagenomeSeq, muscat, readyomics |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IHW_1.40.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | IHW_1.40.0.tgz |
| macOS Binary (sonoma-arm64) | IHW_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/IHW |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IHW |
| Package Short Url | https://bioconductor.org/packages/IHW/ |
| Package Downloads Report | Download Stats |