GraphAlignment

This is the released version of GraphAlignment; for the devel version, see GraphAlignment.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

GraphAlignment

Bioconductor version: Release (3.23)

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

Author: Joern P. Meier <mail at ionflux.org>, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.

Maintainer: Joern P. Meier <mail at ionflux.org>

Citation (from within R, enter citation("GraphAlignment")):

Joern P. Meier, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg. GraphAlignment: GraphAlignment. doi:10.18129/B9.bioc.GraphAlignment, R package version 1.76.0, https://bioconductor.org/packages/GraphAlignment.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GraphAlignment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GraphAlignment")

GraphAlignment	PDF	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GraphAndNetwork, Network, Software
Version	1.76.0
In Bioconductor since	BioC 2.2 (R-2.7) (18.5 years)
License	file LICENSE
Depends
Imports
System Requirements
URL	http://www.thp.uni-koeln.de/~berg/GraphAlignment/

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GraphAlignment_1.76.0.tar.gz
Windows Binary (x86_64)	GraphAlignment_1.76.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	GraphAlignment_1.76.0.tgz
macOS Binary (sonoma-arm64)	GraphAlignment_1.76.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GraphAlignment
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GraphAlignment
Package Short Url	https://bioconductor.org/packages/GraphAlignment/
Package Downloads Report	Download Stats