GenomicCoordinates
This is the development version of GenomicCoordinates; to use it, please install the devel version of Bioconductor.
Enhanced string parsing for genomic coordinates
Bioconductor version: Development (3.23)
Extends string parsing capabilities for genomic coordinates, supporting various formats including comma-separated numbers, space-delimited coordinates, and automatic detection of GRanges, GPos, and GInteractions objects.
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
citation("GenomicCoordinates")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GenomicCoordinates")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicCoordinates")| Introduction to GenomicCoordinates | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataRepresentation, GenomeAnnotation, Infrastructure, Software |
| Version | 0.99.3 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5), GenomicRanges, IRanges |
| Imports | S4Vectors, Seqinfo, InteractionSet, methods, plyranges, plyinteractions |
| System Requirements | |
| URL | https://github.com/js2264/GenomicCoordinates |
| Bug Reports | https://github.com/js2264/GenomicCoordinates/issues |
See More
| Suggests | testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GenomicCoordinates_0.99.3.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicCoordinates |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicCoordinates |
| Bioc Package Browser | https://code.bioconductor.org/browse/GenomicCoordinates/ |
| Package Short Url | https://bioconductor.org/packages/GenomicCoordinates/ |
| Package Downloads Report | Download Stats |