GSCA
GSCA: Gene Set Context Analysis
Bioconductor version: 3.23 · Package version: 2.42.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSCA")Details
| Maintainer | Zhicheng Ji <zji4@jhu.edu> |
| Author | Zhicheng Ji, Hongkai Ji |
| License | GPL(>=2) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GUI, GeneExpression, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/GSCA/ |
Citation
From within R, enter citation("GSCA"):
Zhicheng Ji, Hongkai Ji. GSCA: GSCA: Gene Set Context Analysis. doi:10.18129/B9.bioc.GSCA, R package version 2.42.0, https://bioconductor.org/packages/GSCA.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GSCA_2.42.0.tar.gz |
| Windows binary (x86_64) | GSCA_2.42.0.zip |
| macOS binary (arm64) | GSCA_2.42.0.tgz |
| macOS binary (x86_64) | GSCA_2.42.0.tgz |
Dependencies
Depends: shiny, sp, gplots, ggplot2, reshape2, RColorBrewer, rhdf5, R (>= 2.10.0)
Imports: graphics
Suggests: Affyhgu133aExpr, Affymoe4302Expr, Affyhgu133A2Expr, Affyhgu133Plus2Expr