GOfan
This is the development version of GOfan; to use it, please install the devel version of Bioconductor.
Sunburst Plot for Enriched Gene Ontology Terms
Bioconductor version: Development (3.23)
GOfan provides an intuitive and compact visualization of Gene Ontology (GO) enrichment results using a sunburst layout inspired by SynGO, preserving hierarchical relationships among GO terms and allowing color-based encoding of information such as p-values or gene counts. By converting complex GO DAGs into clean, circular representations, it allows researchers to quickly grasp the hierarchical structure and biological significance of enriched terms. The interactive and customizable visualizations facilitate exploration of key GO categories, enhancing interpretation and presentation of enrichment analyses.
Author: Jianhong Ou [aut, cre]
, Kenneth Poss [aut, fnd]
Maintainer: Jianhong Ou <jou at morgridge.org>
citation("GOfan")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GOfan")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOfan")| GOfan Vignette: GO Enrichment Sunburst Plot | HTML | R Script |
| Reference Manual |
Details
| biocViews | Annotation, GO, Software, Visualization |
| Version | 0.99.2 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | GPL-3 |
| Depends | R (>= 4.5.0), ggplot2 |
| Imports | AnnotationDbi, grid, grDevices, GO.db, igraph, methods, plotly, rlang, stats, scales, vctrs |
| System Requirements | |
| URL | https://github.com/jianhong/GOfan |
| Bug Reports | https://github.com/jianhong/GOfan/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, org.Dr.eg.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GOfan_0.99.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GOfan |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOfan |
| Bioc Package Browser | https://code.bioconductor.org/browse/GOfan/ |
| Package Short Url | https://bioconductor.org/packages/GOfan/ |
| Package Downloads Report | Download Stats |