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Fancy

This is the development version of Fancy; to use it, please install the devel version of Bioconductor.

Frequency and Nonlinear Correlation Hybrid Network Inference

DOI: 10.18129/B9.bioc.Fancy

Bioconductor version: Development (3.24)

Infers microbial co-abundance networks by combining mutual information (via MRNET) and distance correlation into a single hybrid edge score. Bootstrap resampling provides frequency-based confidence, and a weighted scoring function ranks edges for downstream module analysis. Designed for metagenome-assembled genome (MAG) count tables.

Author: Wanxin Lai [aut, cre] ORCID: 0009-0000-1607-2453

Maintainer: Wanxin Lai <wanxin.graceca at gmail.com>

Citation (from within R, enter citation("Fancy")):

Wanxin Lai. Fancy: Frequency and Nonlinear Correlation Hybrid Network Inference. doi:10.18129/B9.bioc.Fancy, R package version 0.99.4, https://bioconductor.org/packages/Fancy.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("Fancy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Fancy")

Details

Package Archives

Follow Installation instructions to use this package in your R session.