ExpoRiskR
This is the development version of ExpoRiskR; to use it, please install the devel version of Bioconductor.
Exposure-Aware Multi-Omics Risk Modeling
Bioconductor version: Development (3.23)
ExpoRiskR provides tools for exposure-aware multi-omics risk modeling in translational and environmental health studies. The package aligns sample identifiers across exposure and multi-omics blocks, performs lightweight preprocessing, and fits exposure-adjusted association models to build interpretable microbe–metabolite networks. It also computes simple exposure perturbation summaries and generates publication-ready visualizations. Workflows support both matrix-based inputs and SummarizedExperiment objects.
Author: Prem Prashant Chaudhary [aut, cre]
Maintainer: Prem Prashant Chaudhary <chaudharyp2 at nih.gov>
citation("ExpoRiskR")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ExpoRiskR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExpoRiskR")| ExpoRiskR | HTML | R Script |
| Reference Manual |
Details
| biocViews | Metabolomics, Microbiome, Network, Regression, Software, SystemsBiology |
| Version | 0.99.4 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | stats, ggplot2, igraph, SummarizedExperiment, S4Vectors, utils |
| System Requirements | |
| URL | https://github.com/ppchaudhary/ExpoRiskR |
| Bug Reports | https://github.com/ppchaudhary/ExpoRiskR/issues |
See More
| Suggests | BiocStyle, BiocCheck, knitr, rmarkdown, withr, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ExpoRiskR_0.99.4.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ExpoRiskR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExpoRiskR |
| Bioc Package Browser | https://code.bioconductor.org/browse/ExpoRiskR/ |
| Package Short Url | https://bioconductor.org/packages/ExpoRiskR/ |
| Package Downloads Report | Download Stats |