EMTscoreData
This is the released version of EMTscoreData; for the devel version, see EMTscoreData.
Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)
Bioconductor version: Release (3.23)
Provides 12 single-cell RNA-seq datasets profiling epithelial–mesenchymal transition (EMT) in human cancer cell lines (MCF7, OVCA420, DU145, and A549) under TGF-beta stimulation, kinase inhibition, and time-course conditions, as reported by Cook DP and Vanderhyden BC (2020). The datasets are distributed via ExperimentHub as SingleCellExperiment objects.
Author: Haimei Wen [aut, cre] 
, Tian Hong [fnd]
Maintainer: Haimei Wen <hudie.luoluo at gmail.com>
citation("EMTscoreData")):Haimei Wen. EMTscoreData: Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020). doi:10.18129/B9.bioc.EMTscoreData, R package version 1.0.0, https://bioconductor.org/packages/EMTscoreData.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EMTscoreData")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| No vignettes available | |
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | GPL-3 |
| Depends | |
| Imports | SummarizedExperiment, Seurat, SingleCellExperiment, AnnotationHub, ExperimentHub, ggplot2 |
| System Requirements | |
| URL | https://github.com/wenmm/EMTscoreData |
| Bug Reports | https://github.com/wenmm/EMTscoreData/issues |
See More
| Suggests | BiocFileCache, SeuratObject, knitr, rmarkdown, googledrive, BiocStyle, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | EMTscoreData_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/EMTscoreData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EMTscoreData |
| Package Short Url | https://bioconductor.org/packages/EMTscoreData/ |
| Package Downloads Report | Download Stats |