DFP
This is the released version of DFP; for the devel version, see DFP.
Gene Selection
DOI: 10.18129/B9.bioc.DFP
Bioconductor version: Release (3.23)
This package provides a supervised technique able to identify differentially expressed genes, based on the construction of \emph{Fuzzy Patterns} (FPs). The Fuzzy Patterns are built by means of applying 3 Membership Functions to discretized gene expression values.
Author: R. Alvarez-Gonzalez, D. Glez-Pena, F. Diaz, F. Fdez-Riverola
Maintainer: Rodrigo Alvarez-Glez <rodrigo.djv at uvigo.es>
citation("DFP")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DFP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DFP")| Howto: Discriminat Fuzzy Pattern | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, Software |
| Version | 1.70.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (18 years) |
| License | GPL-2 |
| Depends | methods, Biobase(>= 2.5.5) |
| Imports | |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DFP_1.70.0.tar.gz |
| Windows Binary (x86_64) | DFP_1.70.0.zip |
| macOS Binary (big-sur-x86_64) | DFP_1.70.0.tgz |
| macOS Binary (sonoma-arm64) | DFP_1.70.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DFP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DFP |
| Bioc Package Browser | https://code.bioconductor.org/browse/DFP/ |
| Package Short Url | https://bioconductor.org/packages/DFP/ |
| Package Downloads Report | Download Stats |