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CexoR

This is the released version of CexoR; for the devel version, see CexoR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates

DOI: 10.18129/B9.bioc.CexoR

Bioconductor version: Release (3.23)

Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Then, irreproducible discovery rate for overlapping peak-pairs across biological replicates is computed.

Author: Pedro Madrigal [aut, cre] ORCID: 0000-0003-1959-8199

Maintainer: Pedro Madrigal <pmadrigal at ebi.ac.uk>

Citation (from within R, enter citation("CexoR")):

Pedro Madrigal. CexoR: An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates. doi:10.18129/B9.bioc.CexoR, R package version 1.50.0, https://bioconductor.org/packages/CexoR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CexoR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CexoR")

Details

Package Archives

Follow Installation instructions to use this package in your R session.