CellMixS
This is the released version of CellMixS; for the devel version, see CellMixS.
All Bioconductor versions of CellMixS
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9
Evaluate Cellspecific Mixing
Bioconductor version: 3.23 · Package version: 1.28.0
CellMixS provides metrics and functions to evaluate batch effects, data integration and batch effect correction in single cell trancriptome data with single cell resolution. Results can be visualized and summarised on different levels, e.g. on cell, celltype or dataset level.
Author: Almut Lütge [aut, cre]
Maintainer: Almut Lütge <almut.lue at gmail.com>
Citation
From within R, enter citation("CellMixS"):
Almut Lütge. CellMixS: Evaluate Cellspecific Mixing. doi:10.18129/B9.bioc.CellMixS, R package version 1.28.0, https://bioconductor.org/packages/CellMixS.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CellMixS")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.28.0 |
| License | GPL (>=2) |
| URL | https://github.com/almutlue/CellMixS |
| Bug Reports | https://github.com/almutlue/CellMixS/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.9 (R-3.6) (7 years) |
| Downloads rank | 627 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | BatchEffect, GeneExpression, SingleCell, Software, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/CellMixS/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CellMixS")| Explore data integration and batch effects | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | CellMixS_1.28.0.tar.gz |
| Windows binary (x86_64) | CellMixS_1.28.0.zip |
| macOS binary (arm64) | CellMixS_1.28.0.tgz |
| macOS binary (x86_64) | CellMixS_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CellMixS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CellMixS |
| Package Downloads Report | Download Stats |
Dependencies
Depends: kSamples, R (>= 4.0)
Imports: BiocNeighbors, ggplot2, scater, viridis, cowplot, SummarizedExperiment, SingleCellExperiment, tidyr, magrittr, dplyr, ggridges, stats, purrr, methods, BiocParallel, BiocGenerics
Suggests: BiocStyle, knitr, rmarkdown, testthat, limma, Rtsne