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CausalR

This is the released version of CausalR; for the devel version, see CausalR.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Causal network analysis methods


Bioconductor version: Release (3.23)

Causal network analysis methods for regulator prediction and network reconstruction from genome scale data.

Author: Glyn Bradley, Steven Barrett, Chirag Mistry, Mark Pipe, David Wille, David Riley, Bhushan Bonde, Peter Woollard

Maintainer: Glyn Bradley <glyn.x.bradley at gsk.com>, Steven Barrett <steven.j.barrett at gsk.com>

Citation (from within R, enter citation("CausalR")):

Glyn Bradley, Steven Barrett, Chirag Mistry, Mark Pipe, David Wille, David Riley, Bhushan Bonde, Peter Woollard. CausalR: Causal network analysis methods. doi:10.18129/B9.bioc.CausalR, R package version 1.44.0, https://bioconductor.org/packages/CausalR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CausalR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CausalR")
CausalR.pdf PDF R Script
Reference ManualPDF

Details

biocViews DifferentialExpression, GraphAndNetwork, ImmunoOncology, Microarray, Network, Network Inference, Proteomics, RNASeq, Software, SystemsBiology, Transcriptomics
Version1.44.0
In Bioconductor sinceBioC 3.2 (R-3.2) (11 years)
License GPL (>= 2)
Depends R (>= 3.2.0)
Imports igraph
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Suggests knitr, RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CausalR_1.44.0.tar.gz
Windows Binary (x86_64) CausalR_1.44.0.zip
macOS Binary (big-sur-x86_64) CausalR_1.44.0.tgz
macOS Binary (sonoma-arm64) CausalR_1.44.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/CausalR
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/CausalR
Package Short Url https://bioconductor.org/packages/CausalR/
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