CNORdt

Add-on to CellNOptR: Discretized time treatments

Bioconductor version: 3.23 · Package version: 1.54.0

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORdt")

Details

Maintainer	A. MacNamara <aidan.macnamara@ebi.ac.uk>
Author	A. MacNamara
License	GPL-2
Downloads rank	415
Source branch	RELEASE_3_23
biocViews	CellBasedAssays, CellBiology, ImmunoOncology, Proteomics, Software, TimeCourse

Documentation

Using multiple time points to train logic models to data

Download

Follow the installation instructions to use this package in your R session.

Source package	CNORdt_1.54.0.tar.gz
Windows binary (x86_64)	CNORdt_1.54.0.zip
macOS binary (arm64)	CNORdt_1.54.0.tgz
macOS binary (x86_64)	CNORdt_1.54.0.tgz

Dependencies

Depends: R (>= 1.8.0), CellNOptR (>= 0.99), abind