CNEr
CNE Detection and Visualization
Bioconductor version: 3.23 · Package version: 1.48.0
Large-scale identification and advanced visualization of sets of conserved noncoding elements.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNEr")Details
| Maintainer | Boris Lenhard <b.lenhard@imperial.ac.uk> Damir Baranasic <damir.baranasic@lms.mrc.ac.uk> |
| Author | Ge Tan <ge_tan@live.com> |
| License | GPL-2 | file LICENSE |
| URL | https://github.com/ComputationalRegulatoryGenomicsICL/CNEr |
| Bug Reports | https://github.com/ge11232002/CNEr/issues |
| Downloads rank | 2321 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, GeneRegulation, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CNEr_1.48.0.tar.gz |
| Windows binary (x86_64) | CNEr_1.48.0.zip |
| macOS binary (x86_64) | CNEr_1.48.0.tgz |
Dependencies
Depends: R (>= 3.5.0)
Imports: Biostrings (>= 2.33.4), pwalign, DBI (>= 0.7), RSQLite (>= 0.11.4), GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.23.16), Seqinfo (>= 0.99.2), rtracklayer (>= 1.25.5), XVector (>= 0.5.4), GenomicAlignments (>= 1.1.9), methods, S4Vectors (>= 0.13.13), IRanges (>= 2.5.27), readr (>= 0.2.2), BiocGenerics, tools, parallel, reshape2 (>= 1.4.1), ggplot2 (>= 2.1.0), poweRlaw (>= 0.60.3), annotate (>= 1.50.0), GO.db (>= 3.3.0), R.utils (>= 2.3.0), KEGGREST (>= 1.14.0)
LinkingTo: S4Vectors, IRanges, XVector
Suggests: Gviz (>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat, BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38, TxDb.Drerio.UCSC.danRer10.refGene, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Ggallus.UCSC.galGal3