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CENTREprecomputed

This is the development version of CENTREprecomputed; to use it, please install the devel version of Bioconductor.

Hub package for the precomputed data of CENTRE and example data


Bioconductor version: Development (3.22)

Interface and documentation for the Experiment Hub records needed by the CENTRE Bioconductor software package. The Experiment Hub records contains the precomputed fisher combined p-values, CRUP correlations. Additionally, the records hold ChIP-seq and RNA-seq data used for the example of the software package.

Author: Sara Lopez Ruiz de Vargas [aut, cre] ORCID iD ORCID: 0000-0002-1290-4774

Maintainer: Sara Lopez Ruiz de Vargas <lopez_s at molgen.mpg.de>

Citation (from within R, enter citation("CENTREprecomputed")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CENTREprecomputed")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CENTREprecomputed")
CENTRE ExperimentHub datasets HTML R Script
Reference Manual PDF

Details

biocViews ChIPSeqData, ChipOnChipData, ExperimentData, ExperimentHub, PackageTypeData, RNASeqData
Version 0.99.2
License Artistic-2.0
Depends R (>= 4.5.0)
Imports ExperimentHub, RSQLite, DBI, BiocGenerics, methods
System Requirements
URL https://github.com/slrvv/CENTREprecomputed
Bug Reports https://github.com/slrvv/CENTREprecomputed/issues
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Suggests knitr, rmarkdown, testthat, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CENTREprecomputed_0.99.2.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CENTREprecomputed
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CENTREprecomputed
Package Short Url https://bioconductor.org/packages/CENTREprecomputed/
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