CENTREprecomputed
This is the development version of CENTREprecomputed; to use it, please install the devel version of Bioconductor.
Hub package for the precomputed data of CENTRE and example data
Bioconductor version: Development (3.22)
Interface and documentation for the Experiment Hub records needed by the CENTRE Bioconductor software package. The Experiment Hub records contains the precomputed fisher combined p-values, CRUP correlations. Additionally, the records hold ChIP-seq and RNA-seq data used for the example of the software package.
Author: Sara Lopez Ruiz de Vargas [aut, cre]
Maintainer: Sara Lopez Ruiz de Vargas <lopez_s at molgen.mpg.de>
citation("CENTREprecomputed")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CENTREprecomputed")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CENTREprecomputed")
CENTRE ExperimentHub datasets | HTML | R Script |
Reference Manual |
Details
biocViews | ChIPSeqData, ChipOnChipData, ExperimentData, ExperimentHub, PackageTypeData, RNASeqData |
Version | 0.99.2 |
License | Artistic-2.0 |
Depends | R (>= 4.5.0) |
Imports | ExperimentHub, RSQLite, DBI, BiocGenerics, methods |
System Requirements | |
URL | https://github.com/slrvv/CENTREprecomputed |
Bug Reports | https://github.com/slrvv/CENTREprecomputed/issues |
See More
Suggests | knitr, rmarkdown, testthat, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | CENTREprecomputed_0.99.2.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/CENTREprecomputed |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CENTREprecomputed |
Package Short Url | https://bioconductor.org/packages/CENTREprecomputed/ |
Package Downloads Report | Download Stats |